[Objective] This paper aimed to explore the genetic relationships among different types of Prunus domestica L. in Xinjiang. [Method] The inter-simple se- quence repeat （ISSR） markers were applied to analyze the genetic diversity and relationships among 30 individual plants from 5 types of P. domestica germpiasm resources in Xinjiang. [Result] A total of 317 bands were amplified by 16 selected IS- SR primers. Among the amplified bands, there were 246 polymorphic bands, accounting for 77.60% of the total. The Nei＇s gene diversity index （H） of individuals was 0.266 6. The average Shannon＇s information index （I） of individuals was 0.399 1. And most of the genetic similarity coefficients ranged from 0.555 2 to 0.996 8. It is indicated that the P. domestica germplasm resources have a certain genetic diversity in Xinjiang. The cluster analysis showed that, at the genetic similarity coefficient of 0.719, the 30 individuals were divided into 3 major groups, including a group of introduced European plum varieties, a group of Tacheng Smoked Plum and Tacheng Binzi and a group of Jiashi Smoked Plum and Wild European Plum. While at the genetic similarity coefficient of 0.949, Jiashi Smoked Plum and Wild European Plum were divided into two small groups. [Conclusion] There are very close genetic relationships between Jiashi Smoked Plum and Wild European Plum, and among the introduced European plum varieties, Tacheng Smoked Plum and Tacheng Binzi.
