Phytoplankton and environmental variables were measured monthly from July 2009 to August 2011 in the Maixi River from the estuary to Baihua Reservoir in the Maotiao River catchment,southwestern China,to understand phytoplankton community structure and environmental factors.The relationship between phytoplankton community structure and environmental factors including hydrological,meteorological,physical,and chemical variables were explored using multivariate analysis.A total of 81 taxa of phytoplankton were identified,which were mainly composed of chlorophyta,bacillariophyta,and cyanobacteria.The phytoplankton community was dominated by Pseudanabaena limnetica during summer and fall and by Cyclotella meneghiniana during winter and spring.The abundance of phytoplankton ranged from 0.24×104 cells/L to 33.45×106 cells/L,with the minimum occurring during February 2010 and the maximum during July 2009.The phytoplankton community was dominated mainly by cyanobacteria from April to September,and by bacillariophyta and pyrrophyta from October to March.Canonical correspondence analysis showed that temperature,pH values,and orthophosphate were the most important driving factors regulating the composition and dynamics of the phytoplankton community in the estuary.Cyanobacteria and euglenophyta abundance and biomass were affected mainly by temperature and pH values,while most chlorophyta and bacillariophyta were influenced by the concentrations of nutrients.