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国家自然科学基金(30600456)

作品数:6 被引量:55H指数:4
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相关机构:中国水产科学研究院东海水产研究所中国水产科学研究院黄海水产研究所复旦大学更多>>
发文基金:国家自然科学基金中国博士后科学基金更多>>
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3种沼虾的16S rRNA基因序列分析被引量:5
2007年
为从分子角度理解3种沼虾,即罗氏沼虾、日本沼虾和祁连沼虾的遗传差异,为沼虾资源的管理、保护和合理开发利用提供理论基础,采集了每种沼虾各2尾样本,采用PCR的方法扩增了其线粒体16S rRNA基因片断并测序。比对后共获得了3种沼虾的297 bp的16S rRNA片断序列,共检测到47个变异位点,总变异率为15.8%。3种沼虾的平均碱基含量分别为T(37.7%)、C(10.9%)、A(29.8%)和G(21.6%)。罗氏沼虾种内个体间序列差异为3%。祁连沼虾和日本沼虾种内个体间差异均为0.7%,且两者种间差异很小,为0~0.7%。罗氏沼虾与祁连沼虾、日本沼虾之间的序列差异在13.1%~14.8%之间,种间差异明显。系统进化树显示罗氏沼虾自成一枝,而日本沼虾和祁连沼虾共同构成另一枝,日本沼虾和祁连沼虾的遗传距离小于5%,结果提示日本沼虾和祁连沼虾有很近的亲缘关系,两者也许是亚种关系。
程起群樊强国夏连军黄宁宇
关键词:沼虾RRNA测序
基于形态框架数据的淞江鲈种群鉴别(英文)被引量:1
2011年
采用形态框架数据阐明了中国3个现存的淞江鲈地理种群的形态差异。每条鱼测量22个形态度量参数,用Burnaby的多变量方法校正形态度量参数,采用聚类和判别分析来区别种群的差异。结果显示:1)3个地理种群可以分成两组,第1组包括青龙河种群和富春江种群,第2组包括鸭绿江种群;2)根据F-remove值,挑选出最大的5个形态参数:D(2-3)、D(7-9)、D(6-5)、D(6-8)、D(2-1),用挑选后的5个形态参数进行判别分析的判别准确率达100%,显示这3个地理种群是形态上可辨别的种群。地理隔离和环境因子也许是淞江鲈种群形态差异的主要影响因素。虽然形态度量对于判别淞江鲈的种群有效,但对于其种群结构的进一步确认研究是必要的。
王金秋程起群梁鸿子罗武松
基于线粒体cyt b基因标记探讨凤鲚3群体遗传结构和进化特征被引量:36
2008年
为阐明凤鲚不同地理群体的遗传结构和进化关系,采用凤鲚长江(21尾)、闽江(22尾)和珠江(22尾)群体的线粒体DNA(mitochondrial DNA,mtDNA)的细胞色素b(cytb)基因片段序列进行分析。共获得3群体cyt b基因片断607 bp的一致序列。序列有102个变异位点,总变异率为16.8%,其中68个为简约位点。各单倍型的变异全部是转换或颠换,无插入和缺失。(A+T)含量为57.6%,大于(G+C)的含量42.4%。核苷酸多态性以闽江群体最高,其它两群体较低。自然选择检验显示3群体内部在分子水平上存在自然选择作用。在所获得的65个序列中,共检测到34种单倍型。群体内的遗传距离为0.3%~1.2%之间,群体间遗传距离在0.8%~10.8%之间。长江群体与珠江群体之间的遗传距离较大为10.8%,长江群体与闽江群体间的遗传距离为10.6%,而珠江和闽江群体之间的遗传距离最小为0.8%。AMOVA分析显示,群体间遗传变异占总变异的90.25%,群体内的遗传变异占总变异的9.75%,提示群体间变异是总变异的主要来源。研究结果提示长江群体和闽江以及珠江群体间的分化可能已达亚种水平。
程起群马春艳庄平沙珍霞陆星缪炯
关键词:凤鲚细胞色素B基因遗传分化
基于线粒体12SrRNA序列研究凤鲚两个野生群体的遗传多样性被引量:10
2007年
对凤鲚Coilia mystus长江群体和珠江群体的线粒体DNA(m itochondrial DNA,m tDNA)的12SrRNA基因片断序列进行分析。排列比对后,获得该基因365 bp的一致序列。在所测得的42个序列中,共检测到6种单倍型,其中长江群体有2种,珠江群体有4种。长江群体和珠江群体的单倍型多样性指数分别为0.5263和0.6104,核苷酸多样性指数分别为0.144%和0.192%。凤鲚长江群体内部的遗传距离为0.3%,珠江群体内部的遗传距离为0.3%~0.5%,长江群体与珠江群体之间的遗传距离为0.8%~1.4%。邻接树显示长江凤鲚和珠江凤鲚各自形成一个单系类群。AMOVA分析显示群体间的变异占总变异的82.80%,提示两者可能有相互隔离的遗传结构。
程起群马春艳缪炯陆星沙珍霞
关键词:凤鲚分子标记
Mitochondrial COI Gene Sequence Variation and Taxonomic Status of Three Macrobrachium Species被引量:7
2009年
Freshwater prawns (Decapoda: Caridea: Macrobrachium) play an important role in domestic fishery resources. Culturing M. rosenbergii and M. nipponense brings great economic benefits, as the two species were widely farmed in China. M. qilianensis, a native species with natural distribution limited in Gansu province, was classified into genus Macrobrachium based on external morphological characters. In order to understand the molecular genetic differences among the three species of Macrobrachium, i.e., M. rosenbergii, M. nipponense, and M. qilianensis, we analyzed sequences of mitochondrial cytochrome oxidase subunit I (COI) of them. It would provide theoretical basis of exploiting and utilizing Macrobrachium resources rationally. A total of 30 individuals (10 individuals of each species) were collected from Gansu and Zhejiang province. Samples of M. qilianensis were wild, however, that of M. rosenbergii and M. nipponense were cultured. Their mitochondrial COI gene segment sequences were obtained by using the method of PCR amplification and sequencing. After alignment, 649 bp consensus sequences of COI were obtained. One hundred and sixty-nine variable sites were detected in all 30 individuals, accounting for 26.04% of total sequence. A total of seven haplotypes were also detected. Nucleotide diversity was 0.411% within M. rosenbergii, 0.092% within M. nipponense, and 0.031% within M. qilianensis. Genetic diversity of wild M. qilianensis was much lower than that of cultured M. rosenbergii and M. nipponense. Genetic distances between different haplotypes of the three prawns ranged from 19.87% to 23.84%. It suggested that the three species were valid species, because genetic distances among them were quite great. To further determine the taxonomic status of the three prawns in family Palaemonoidae, we downloaded the corresponding COI sequences of Palaemonoidae prawns from Genbank and analyzed the phylogenetic relationships of them. Phylogenetic tree (NJ) showed that M. nipponense, M. rosenbergii an
张凊漪程起群管卫兵
关键词:MACROBRACHIUMTAXONOMY
Morphological Variation of Coilia Mystus (Clupeiformes: Engraulidae) in Three Chinese Estuaries
2010年
Truss network data were collected and investigated in order to clarify the morphological variation in populations of Coilia mystus from three Chinese estuaries. Nineteen morphometric measurements were made for each individual, and Burnaby's multivariate method was used to obtain size-adjusted shape data. The cluster analysis and discriminant analysis were used to discriminate morphological differences among populations. The results indicated that 1) the three populations were clustered into two distinct groups: the first group included Changiiang C. mystus and Zhujiang C. mystus, the last one included Minjiang C. mystus, and 2) discriminant analysis with selected 5 morphological parameters showed that the identification accuracy was between 98.7952% and 100%, and global identification accuracy was 99.2933%. Reproductive isolation and adaption to environmental condition are determinant factors for morphological variation between populations of C. mystus.
Qiqun Cheng
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